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Model:

Name: Najdi_2010_FA_Biosynthesis
Description:
Keywords:
References:
  • Tarek S. Najdi, Chin-Rang Yang, Bruce E. Shapiro, G. Wesley Hatfield and Eric D. Mjolsness. Application of a Generalized MWC Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes, Journal of Bioinformatics and Computational Biology, 2006.

    • Comment:

    Reactants:
  • $Complex$ADH1$AHD$
  • $Complex$ADH1$Eth$
  • $Complex$ADH1$NADH$
  • $Complex$ADH1$NADH$AHD$
  • $Complex$ADH1$NAD$
  • $Complex$ADH1$NAD$Eth$
  • $Complex$ADH2$AHD$
  • $Complex$ADH2$Eth$
  • $Complex$ADH2$NADH$
  • $Complex$ADH2$NADH$AHD$
  • $Complex$ADH2$NAD$
  • $Complex$ADH2$NAD$Eth$
  • $Complex$ADH3$AHD$
  • $Complex$ADH3$Eth$
  • $Complex$ADH3$NADH$
  • $Complex$ADH3$NADH$AHD$
  • $Complex$ADH3$NAD$
  • $Complex$ADH3$NAD$Eth$
  • $Complex$ALD6$AHD$
  • $Complex$ALD6$AHD$NADP$
  • $Complex$ALD6$NADP$
  • $Complex$AraB$ATP$
  • $Complex$AraB$Ribu$
  • $Complex$AraB$Ribu$ATP$
  • $Complex$Ara$AraA$
  • $Complex$DHAP$TPI$
  • $Complex$E4P$TAL$
  • $Complex$E4P$TKL1x$
  • $Complex$F16P$FBP$
  • $Complex$F6P$PGI$
  • $Complex$F6P$TALx$
  • $Complex$F6P$TKL1$
  • $Complex$FBA$DHAP$
  • $Complex$FBA$DHAP$GAP$
  • $Complex$FBA$F16P$
  • $Complex$G3P$GPP$
  • $Complex$G6P$PGI$
  • $Complex$GAPDH$DPG$
  • $Complex$GAPDH$DPG$NADH$
  • $Complex$GAPDH$GAP$
  • $Complex$GAPDH$GAP$NAD$
  • $Complex$GAPDH$NADH$
  • $Complex$GAPDH$NAD$
  • $Complex$GAP$TALx$
  • $Complex$GAP$TKL1x$
  • $Complex$GAP$TPI$
  • $Complex$GlK$ATP$
  • $Complex$GlK$Glc$
  • $Complex$GlK$Glc$ATP$
  • $Complex$GPDH$G6P$
  • $Complex$GPDH$NADP$
  • $Complex$GPDH$NADP$G6P$
  • $Complex$GPD$ADP$
  • $Complex$GPD$ATP$
  • $Complex$GPD$DHAP$
  • $Complex$GPD$DHAP$NADH$
  • $Complex$GPD$G3P$
  • $Complex$GPD$G3P$NAD$
  • $Complex$GPD$NADH$
  • $Complex$GPD$NAD$
  • $Complex$HXK1$ATP$
  • $Complex$HXK1$Glc$
  • $Complex$HXK1$Glc$ATP$
  • $Complex$HXK2$ATP$
  • $Complex$HXK2$Glc$
  • $Complex$HXK2$Glc$ATP$
  • $Complex$PEP$Eno1$
  • $Complex$PEP$Eno2$
  • $Complex$PG2$Eno1$
  • $Complex$PG2$Eno2$
  • $Complex$PG2$PGM$
  • $Complex$PG3$PGM$
  • $Complex$PGDH1$NADP$
  • $Complex$PGDH1$PG6$
  • $Complex$PGDH1$PG6$NADP$
  • $Complex$PGK$ADP$
  • $Complex$PGK$ATP$
  • $Complex$PGK$DPG$
  • $Complex$PGK$DPG$ADP$
  • $Complex$PGK$PG3$
  • $Complex$PGK$PG3$ATP$
  • $Complex$PGL$PGLase$
  • $Complex$PyK1$ADP$
  • $Complex$PyK1$PEP$
  • $Complex$PyK1$PEP$ADP$
  • $Complex$R5P$RKI$
  • $Complex$R5P$TKL1x$
  • $Complex$Ribu5P$AraD$
  • $Complex$Ru5P$RKI$
  • $Complex$Ru5P$RPE$
  • $Complex$S7P$TAL$
  • $Complex$S7P$TKL1$
  • $Complex$XDH$NADH$
  • $Complex$XDH$NAD$
  • $Complex$XDH$NAD$Xyli$
  • $Complex$XDH$Xyli$
  • $Complex$XK$ATP$
  • $Complex$XK$Xylu$
  • $Complex$XK$Xylu$ATP$
  • $Complex$XR$NADH$
  • $Complex$XR$NADH$Xyl$
  • $Complex$XR$NADPH$
  • $Complex$XR$NADPH$Xyl$
  • $Complex$XR$NADP$
  • $Complex$XR$NAD$
  • $Complex$XR$Xyl$
  • $Complex$Xylu5P$RPE$
  • $Complex$Xylu5P$TKL1$
  • XR
  • XDH
  • XK
  • AraA
  • AraB
  • AraD
  • GPDH
  • PGLase
  • PGDH1
  • RKI
  • RPE
  • TKL1
  • TKL1x
  • TAL
  • TALx
  • GlK
  • HXK1
  • HXK2
  • PGI
  • PFK
  • FBP
  • FBA
  • GPD
  • GPP
  • TPI
  • GAPDH
  • PGK
  • PGM
  • Eno1
  • Eno2
  • PyK1
  • PDC1
  • ADH1
  • ADH2
  • ADH3
  • ALD6
  • ATP
  • ADP
  • AMP
  • NAD
  • NADH
  • NADP
  • NADPH
  • F26bP
  • AcCoA
  • MalCoA
  • ACC
  • ACCx
  • acylCoA
  • CoA
  • ACS
  • ASD
  • FAS
  • Xyl
  • Glc
  • Xyli
  • Xylu
  • Xylu5P
  • Ara
  • Ribu
  • Ribu5P
  • G6P
  • PGL
  • PG6
  • Ru5P
  • E4P
  • R5P
  • S7P
  • F6P
  • F16P
  • GAP
  • DHAP
  • G3P
  • glycerol
  • DPG
  • PG3
  • PG2
  • PEP
  • Pyr
  • AHD
  • Ac
  • Eth
    • Reactions:
  • AcCoA-MalCoA-NADPH/AcCoA-CoA-NADP Math
  • PEP to PG2 by Eno2 Math
  • PGL to PG6 Math
  • Ru5P to R5P Math
  • R5P to Ru5P Math
  • Ru5P to Xylu5P Math
  • Xylu5P to Ru5P Math
  • G6P to F6P Math
  • F6P to G6P Math
  • F16P to F6P Math
  • G3P to glycerol Math
  • DHAP to GAP Math
  • GAP to DHAP Math
  • PG3 to PG2 Math
  • PG2 to PG3 Math
  • PG2 to PEP by Eno1 Math
  • PEP to PG2 by Eno1 Math
  • PG2 to PEP by Eno2 Math
  • Ac to AcCoA
  • PEP to Pyr Math
  • GAP to DPG Math
  • DPG to GAP Math
  • DPG to PG3 Math
  • PG3 to DPG Math
  • Xylu5P to GAP Math
  • GAP to Xylu5P Math
  • R5P to GAP Math
  • GAP to R5P Math
  • S7P to F6P Math
  • F6P to S7P Math
  • AcCoA to MalCoA Math
  • DHAP to G3P Math
  • G3P to DHAP Math
  • G6P to PGL Math
  • PG6 to Ru5P Math
  • Glc to G6P by GlK Math
  • Glc to G6P by HXK1 Math
  • Glc to G6P by HXK2 Math
  • AHD to Eth / ADH1 Math
  • Eth to AHD / ADH1 Math
  • AHD to Eth / ADH2 Math
  • Eth to AHD / ADH2 Math
  • AHD to Eth / ADH3 Math
  • Eth to AHD / ADH3 Math
  • AHD to Ac Math
  • R5P Annihilation Math
  • E4P Annihilation Math
  • PEP Annihilation Math
  • Pyr Annihilation
  • Ac Annihilation Math
  • ASA Annihilation Math
  • PEP Creation Math
  • Pyr Creation Math
  • DHAP and GAP to F16P Math
  • F6P-F16P Math
  • R5P Annihilation
  • E4P Annihilation
  • PEP Annihilation
  • Pyr Annihilation
  • Ac Annihilation
  • acylCoA Annihilation Bio
  • PEP Creation
  • Pyr Creation
  • F6P-F16P Bio
  • G6P to PGL
  • PGL to PG6
  • PG6 to Ru5P
  • Ru5P to R5P
  • R5P to Ru5P
  • Ru5P to Xylu5P
  • Xylu5P to Ru5P
  • Xylu5P to GAP
  • GAP to Xylu5P
  • R5P to GAP
  • GAP to R5P
  • S7P to F6P
  • F6P to S7P
  • Glc to G6P by GlK
  • Glc to G6P by HXK1
  • Glc to G6P by HXK2
  • G6P to F6P
  • F6P to G6P
  • F16P to F6P
  • F16P to DHAP
  • DHAP and GAP to F16P Bio
  • DHAP to G3P
  • G3P to DHAP
  • G3P to glycerol
  • DHAP to GAP
  • GAP to DHAP
  • GAP to DPG
  • DPG to GAP
  • DPG to PG3
  • PG3 to DPG
  • PG3 to PG2
  • PG2 to PG3
  • PG2 to PEP by Eno1
  • PEP to PG2 by Eno1
  • PG2 to PEP by Eno2
  • PEP to PG2 by Eno2
  • PEP to Pyr
  • Transcriptional Regulation of AHD by Pyr
  • AHD to Eth / ADH1
  • Eth to AHD / ADH1
  • AHD to Eth / ADH2
  • Eth to AHD / ADH2
  • AHD to Eth / ADH3
  • Eth to AHD / ADH3
  • AHD to Ac
  • Ac to AcCoA
  • AcCoA to MalCoA
  • AcCoA-MalCoA-NADPH/AcCoA-CoA-NADP Bio